rs47487925 SNP Detail

Summary

• ID
  rs47487925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44436386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATAGGACT CTGGGTTTGG AGTTCATAGA GAATAAGGCC
  ATGATGAAGG TTCTAAGTCT ACTGATGCCC ATAACCCACA GCCCCACAGC CCTGGGTTTT
  Y
  CCACTTGAAC TGCTCCTAAC AATATCCTTT GGTAGTCCAA TAGCAGCCAA GTCAAGTGAA
  CTCCTATGCT TAACTGGAAG ACACTCAGGC AGGGGGCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136396582	ENSMUSSNP4083555	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss322941031	CHEV_9_44333172	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47487925					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44436386 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr200337	regulatory region 200337	1786 bp distal
Rr203858	regulatory region 203858	171 bp distal
Rr206318	regulatory region 206318	614 bp proximal
Rr401337	regulatory region 401337	1401 bp upstream
Tssr89167	transcription start site region 89167	879 bp downstream
Tssr89168	transcription start site region 89168	1308 bp downstream
Tssr89169	transcription start site region 89169	1335 bp downstream
Tssr89170	transcription start site region 89170	1380 bp downstream
Tssr89171	transcription start site region 89171	1415 bp downstream