rs47488248 SNP Detail

Summary

• ID
  rs47488248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35284101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGG CACCGGACAG GAGTTCGGCG
  Y
  CTGCCGCTTG TCGCGCCTGT ACAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148813173	ENSMUSSNP2318875	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47488248					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35284101 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	1568 bp upstream
Cpgi18874	CpG island 18874	within coordinates
Rgs9bp	regulator of G-protein signalling 9 binding protein	within coordinates
Rr156307	regulatory region 156307	1501 bp distal
Rr164861	regulatory region 164861	1612 bp distal
Rr167549	regulatory region 167549	within coordinates
Rr400265	regulatory region 400265	1353 bp upstream
Tssr65908	transcription start site region 65908	1556 bp upstream
Tssr65909	transcription start site region 65909	1619 bp upstream
Tssr72043	transcription start site region 72043	865 bp downstream
Tssr72044	transcription start site region 72044	876 bp downstream
Tssr72045	transcription start site region 72045	901 bp downstream