rs47488545 SNP Detail

Summary

• ID
  rs47488545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81337025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCTTGC TCTGTGCCAT
  GACCCTGAAG AGACTTGATG TCAGACAGTG CACAAACTCT GGCCAGGGCC CCTCTGCACT
  GACTCCCCAA ACCTCTACCC TATACTGAGC CTTTATCCCA GAATGAACCC TGAGCCTGAA
  TAACATAGTC ACAGACACAA CATAGTGCTG ACTAAAGGCC AACTCCAGCC AAGCCCATGA
  Y
  TGGGCCTCAT GCACTGAGTT CAAGTGAGTA CTGGGGTTCA GCATGAAGGA GGACTGAGCA
  CAGCACCCCA GAATGAGTGC AGACAGAACG GTCACCTGCA GCCTGCTATG GAAGCTGATG
  TGGTATGAAG CAGGCACCAT AACAGAACAG AAGATTACGA ACACTTGACC TCCACAGCAG
  GCACTTAGTC AGTCTTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292389	NES16908678	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47488545					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292389	NES16908678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81337025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1994	CpG island 1994	1565 bp distal
Cpgi1995	CpG island 1995	1502 bp proximal
Gna15	guanine nucleotide binding protein, alpha 15	1115 bp downstream
S1pr4	sphingosine-1-phosphate receptor 4	1059 bp upstream
Tssr98631	transcription start site region 98631	1583 bp upstream
Tssr98632	transcription start site region 98632	1548 bp upstream
Tssr98633	transcription start site region 98633	1521 bp upstream
Tssr98634	transcription start site region 98634	1478 bp upstream