rs47489637 SNP Detail

Summary

• ID
  rs47489637
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45861796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAATGGT TGTTCTGGGT
  GTGAATAGTC ACTGTGCCAA CCCACTGTGT TACTGGGGTC TTTGTCAGAC AGTAACTGTT
  CTTCCTTACC CGGAGGAGAC CAAGGCATGA GGAGGACAAG TGAGTGCTTA CGGAACCACC
  TGCCAGCACC CACAGGATGA CTCCTAGACT TCAGAGCTTT CTCTTTGTGA AGGGAAGTGA
  Y
  ACACATCTGA GACAAGAGGA TCAATACTTA AGGCCAGCCT GGACTAGATA CCAAAACACT
  GTCCAAAAAA AAAAAAAAAA AAAAGGGTGT TAGGTAGTAG GTTGGGGTGA TAGCTCAGTG
  ACAGAACACT TGTCTAGCAT TTGGGAAGAA CTAGCTTCAA TTCCCAATTC CAGAAGTTCC
  TTTGGAGCAG GGGATGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259858	NES15755840	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47489637					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259858	NES15755840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45861796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9192	CpG island 9192	885 bp distal
Rr405301	regulatory region 405301	1260 bp upstream
Rr527421	regulatory region 527421	1204 bp distal
Rr527424	regulatory region 527424	703 bp distal
Rr527425	regulatory region 527425	92 bp proximal
Rr527426	regulatory region 527426	1799 bp proximal
Tmem151b	transmembrane protein 151B	1193 bp upstream
Tssr148206	transcription start site region 148206	1287 bp upstream
Tssr148207	transcription start site region 148207	1202 bp upstream
Tssr148208	transcription start site region 148208	1151 bp upstream