rs47489653 SNP Detail

Summary

• ID
  rs47489653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37721853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCAAATTC ATGGGATGTG TGTTAGAACT GGTAGAGGAG
  AAGATGGGAG AAGTTGACTT TTCCAGCTCT AAACTGTACT CGTGGATACA CTACTCTTCC
  R
  CGATAGTCAG ATTTGAGGAC TGTGAGGTTG ATTAGCATAT TAACGTCTTC ATTTTGACAT
  TTCCTAGTCT GAGGGTAAAC TGCCTTCTTT GCTCCAAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134810565	ENSMUSSNP3790009	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320711616	CHEV_3_37566626	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47489653					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37721853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13101	CpG island 13101	1301 bp proximal
Rr575535	regulatory region 575535	367 bp distal
Rr575536	regulatory region 575536	within coordinates
Tssr28922	transcription start site region 28922	1111 bp upstream