rs47490873 SNP Detail

Summary

• ID
  rs47490873
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32520650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTATGTC AAGTTGGCAA
  AAGCACAAGG GAATACTCAC TCATACTGTA ATTTCCCTTA CAGTCTTGAG TAATACTATT
  CTACAGGCGC TGCCTTTTCA TATGCATTGT CTTCAGCTCC TCAAAGATCT TAGTAGGGAC
  AGGATATATA TTACATAGCT TGTACCAGAG CAGCCTCAAA AGGCCTGCAC ACTACAGATG
  C
  ACATTAAAAA TGCATTCTGT TCGTAGTGAA AGTCAGTCAA CATTTTTCAA GGCCCACTAC
  CTAAAGCCGT GTGGGAGGAA CTAGGATGAA AATGAGAAAA TCTTTTCTTA AAGCTGTTGA
  CAAACCTGGT CAACTCAAGC AAGCAAGGAA AAAAATACAG AGGAGTGTCA AGGAGGTGAT
  GTGTCAGGGA AGTGATGGGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148847906	ENSMUSSNP4727609	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324311969	CHEV_13_32428536	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47490873					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32520650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5422	CpG island 5422	1281 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Tssr121995	transcription start site region 121995	1833 bp downstream
Tssr121996	transcription start site region 121996	1887 bp downstream
Tssr121997	transcription start site region 121997	1898 bp downstream