rs47491143 SNP Detail

Summary

• ID
  rs47491143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91402389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAGAAA GTCTTAAATC
  TGTGAACATT CCTCAGTGAA AATTTAGACT CAGCAACAGA CCTAAGGAGT ACACTGATGT
  TAAAAACACT TCTCTCTGCA TTTCACCTGC AAGCTTCAGA AATACTATGT GTCCCCCAAC
  ATATCTATGG CCTGAATCAC TGCTTTGCTT TGTCTATTTC ACTTTTATTA CCCAAGGTTC
  R
  ACTGACTGTT CAGTTAGTTG TTTTCACTGT GACAGGGTCA GAACCAAGGG CCTTATAGGT
  GCCAAGCAAG CAGTTTACCA CAGCCTCCAT TTCCTTTCCA TTGTGAATCA GGGTCTCACT
  CTGTTGTCCA GGATGGTGAT GAATCACAGG GACTCGTTAT CCTCCTACTT CAGCCTCCTG
  AAGAGCAAGC ATTACAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60293380	NES15791726	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47491143					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293380	NES15791726	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91402389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9653	CpG island 9653	1992 bp distal
Nrxn1	neurexin I	1890 bp upstream
Rr334029	regulatory region 334029	1789 bp distal
Rr340336	regulatory region 340336	789 bp distal
Tssr149873	transcription start site region 149873	1966 bp upstream
Tssr149874	transcription start site region 149874	1932 bp upstream
Tssr149875	transcription start site region 149875	1884 bp upstream