rs47491647 SNP Detail

Summary

• ID
  rs47491647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGGTGA CATCAGAAGT
  AGTTGTGATT TCGGCAGTGG TTGTGACATC AGCGGTGGTT GTGACATCAG CAGTGGTGGT
  GACTTCAGCC TTTGTGGTGG ATGGGGAACT GGATCTTTGC TGGTACTCCT GCCGTGGCCA
  TGCCTCACTG TTTTCCCCGT CTGTAAGTTA CAGATGTTAG AATTACTTGG AAGGAGAAAC
  Y
  TCAATACAAA ATGATTCCTT TCTCAGATGT ATGCGGCAAG TGTGTCAGGC CCTGTCTACC
  CCCTTCAGCC TTTCTTTTTC CTGTTCTTTT AATTTGTTAC TATTAGCGGT TGCACTGGAG
  CTCACAAAAC TCCACCTGCT TTTGTCTTCC AAGTGCTAAG AATAAAGAAC TGTGTCCTCC
  CTGATTGGCT TTTGATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss60847296	NES16004173	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs47491647					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847296	NES16004173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190184 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	544 bp upstream
Tssr49319	transcription start site region 49319	380 bp downstream
Tssr49320	transcription start site region 49320	368 bp downstream
Tssr53954	transcription start site region 53954	450 bp upstream
Tssr53955	transcription start site region 53955	434 bp upstream
Tssr53956	transcription start site region 53956	415 bp upstream
Tssr53957	transcription start site region 53957	398 bp upstream
Tssr53958	transcription start site region 53958	343 bp upstream
Tssr53959	transcription start site region 53959	330 bp upstream
Tssr53960	transcription start site region 53960	264 bp upstream
Tssr53961	transcription start site region 53961	165 bp upstream
Tssr53962	transcription start site region 53962	147 bp upstream
Tssr53963	transcription start site region 53963	108 bp upstream
Tssr53964	transcription start site region 53964	68 bp upstream
Tssr53965	transcription start site region 53965	43 bp upstream
Tssr53966	transcription start site region 53966	816 bp downstream
Tssr53967	transcription start site region 53967	842 bp downstream