rs47492756 SNP Detail

Summary

• ID
  rs47492756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24337546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCAGCTT CCTGAGTCAC
  CTGGTGGCTT GTACCACCAA GTCCGCTTTT GCTGGCGGCA GGGTCTCCTT ATGCAGTACA
  AGCTAGACTG CAACTCCAGA CCCCACTGCC TCAGCCTCCT CAGTAGCCGG GATTGCAGGC
  TTGTACCACC GTGTTTGTCT CCTAGCCTTT CTCTTAAACT TTTTTTCTTC AGTCTCTTAA
  Y
  TGGATCCTTC GGAAGCTACT TTCTGAGGCT CCTCCCCCTT TTGACGTAGT CGTTGAGGCT
  TCAGTTTGAG CCCGGCTCTC CAGGCTGTTG CGTTTGTTAA TCAGCCTGTT CTCGTTGGAC
  TGTATTCTTT GAAGCTCTTC TCTTTGACCA CACCACCCTC CCTTCTCCGG TAGCTCTCTA
  CCCACAGATC TGCCCTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982646	NES16151000	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47492756					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982646	NES16151000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24337546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	736 bp distal
Cpgi18555	CpG island 18555	216 bp proximal
Cpgi18556	CpG island 18556	1908 bp proximal
Gm26550	predicted gene, 26550	205 bp upstream
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	within coordinates
Tssr2135	transcription start site region 2135	1507 bp downstream
Tssr65017	transcription start site region 65017	1601 bp downstream
Tssr65018	transcription start site region 65018	1557 bp downstream
Tssr65019	transcription start site region 65019	1532 bp downstream
Tssr65020	transcription start site region 65020	655 bp upstream
Tssr65021	transcription start site region 65021	663 bp upstream