rs47494295 SNP Detail

Summary

• ID
  rs47494295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128535631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGAAGA AGGAGCTTTT
  GTCGTGTGCC CAGAGTTTAT CCATTATCCC GACTGCCAGG GGGAGATGAG CTTGAAAATG
  ACCAGGCTCA AAAAGTATTT CTGTGAATAC TAAAACTACT TAGTTTGAGG TAGAGGGATG
  TCAATCACGA GTCAACCTAA TAAGAGGCTT GTGGACCCTC TCAAATCTTC TAAATTATCT
  Y
  GTCTACTGGC AAGAATTCCT TATGGAACCT TCTAGAAGGA TGCTTATCCC CTTGGCCTCT
  GCCTTTGCCT GACAAGGAGG TAAAACCAGG TAAAATTCAC ATCTCTGGGC CTTAGTGATT
  TGACAGCTTT GGGTGGGGCT GTGAACATTT GCATTTTTTT AAATGTCTTG ATTTCTACAC
  CAGCCAGAGT TGAGACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60796455	NES16465402	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47494295					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60796455	NES16465402	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128535631 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	1835 bp downstream
Rr396265	regulatory region 396265	1580 bp downstream
Rr417790	regulatory region 417790	1585 bp distal
Rr417791	regulatory region 417791	76 bp proximal
Tssr13482	transcription start site region 13482	80 bp downstream