rs47494636 SNP Detail

Summary

• ID
  rs47494636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14913271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTGTTT GCCACAGGGC
  AGCTGCCCCT GAACTCCATC CCCAACTTTC TCCTTATTCT ATGGACAAAT GCTGTCTCTG
  CAAAGACAAG TTCCATCTTA AAATGACATT TTACAGCTCA GGCATACAAA CACAAACAGA
  GTCCATTAAA CTGTGTTTCG GTAAAACCAA GCTCAATCAA GAGTGTCACA AGTAATCAAC
  R
  GTCATTAACA GCATCCCATC TAATCTTGCT GCCTTCCCCA CATGGAAAAG GGACCAAGAA
  GTGAATAGTA TTTGGTCCTG GATCAAGCCT CCTGGGGCCA ATGCAATTGC ATCCAAGCTC
  CATGGGTCAC ACACACACAC ACACACACAC ACACACACAC ACACACAGAC TCTTCCCCAT
  CCACAAGTCC TCACTGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60540266	NES16561541	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47494636					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60540266	NES16561541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14913271 () rs orientation: forward

Symbol	Name	Function Class
Thbs2	thrombospondin 2	within coordinates
Tssr146500	transcription start site region 146500	1073 bp downstream
Tssr146501	transcription start site region 146501	1214 bp downstream