rs47495767 SNP Detail

Summary

• ID
  rs47495767
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79662326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTGCGG CCTCACAGCC
  AGGGAGACCT TCCCACGAAC CCCACCAGGC ATCAACCAAG CCCCCAAGGC TTCCACTGGG
  CCCCACCTAG CCAATGGCTA TACCACTGCC GTCACGTCAC CAATGAAGGA AGTGACCCTG
  GAGAAGTCTT TCCATGTTTC CCCAGCTAGA TCCATCCATA TAGTCAATGA TCCTGGCAGT
  S
  AGACCCAGGC AGAATCCCCT GAGACCCCCA AAGAGACGCC CATCGAGAGA GAGATCAGGC
  TGGCCCAGGA GCGAGAGGCA GAGCTGAGGG AGCAGAGAGG GCTTGGGCGA GCTGCCGGGC
  ATCAAGAGCT GGTACAGATC CCCAGCAGGC CACTGCTCAG CAAGATGAGC TTGACAGAGA
  CACCTCCACG AAGAGACAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52386537	NES15268620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47495767					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52386537	NES15268620	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79662326 () rs orientation: forward

Symbol	Name	Function Class
Misp	mitotic spindle positioning	within coordinates
Rr216663	regulatory region 216663	326 bp distal
Rr225117	regulatory region 225117	1925 bp distal
Rr228949	regulatory region 228949	275 bp proximal
Tssr94404	transcription start site region 94404	1874 bp downstream
Tssr94405	transcription start site region 94405	1797 bp downstream
Tssr94406	transcription start site region 94406	1772 bp downstream
Tssr94407	transcription start site region 94407	469 bp downstream
Tssr94408	transcription start site region 94408	354 bp downstream
Tssr94409	transcription start site region 94409	172 bp downstream