rs47495926 SNP Detail

Summary

• ID
  rs47495926
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:52864191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTAGGAG ACAATGCCTC
  ATCCCACAGA GGGGAGAGTC CATGTCCAGC TTTTTATGGA GCCTTTGGAA GCCGCTATAT
  ACCTGTTCTT CAAACACTCG GGTTCCCCGT CCCACCCTGA GCCATTTATC TACACACATC
  TGCAGCTGGA AGCCTCCTGG AAGGGCTCAT GGACCTAATT CCGAATATCC CACTGCCCCA
  R
  AACAGGTTAA ACTCCTGGCT TCATGCTGCC ACCATCAGGG TTAACTTGCT TCTGGTAAAA
  CACCTCAGTG GGTCACTCTG CTGAGGACCA CAGTGCACCT GCCTCTGACA ACCTGGACAA
  ACTAACTTCT ACCCACCTGC TGTATAATAA CCACCACTGC CATCTCGGCC AATATGACCT
  CCCAGGTGTC CCATACAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61796134	NES17726064	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47495926					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61796134	NES17726064	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:52864191 () rs orientation: forward

Symbol	Name	Function Class
Rr479878	regulatory region 479878	1688 bp proximal
Rr479879	regulatory region 479879	1987 bp proximal