rs47496612 SNP Detail

Summary

• ID
  rs47496612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104694387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACCTTTT CTTGACTATT
  TCATCTGCTC TCCAGGACTG AGTACCCTAC AGCCCCTAGA TGCTGCCAAG GCAATTACCT
  CCAGGATTAT AACTGTCTGT AGGAGGAGCC AATGGGAAGT AGCCATTAAG AGCAGGGGAC
  TCTTTATTTT TTTTTTTTAA TTTATTTTTA GTTTCATGTG CATTGGTGTT TGGCCTGCGC
  R
  TGTGTCTGTA TGAGGGTGTT GGAACTGAAA CTCCCTGGAA CTGGAGTTAT AGACAGTTGT
  GTGCTGCCAT GTGGGTGCTG GGAATTGAAC CAAGGTCCTC TAGAAGAGCA GCCAGTGCTT
  TTAACCATGA GCAATCTCTC CAGCCCCAAG AGCAGGGACT TGTAAGTCTG AGTGTTTTGA
  CCCCCAAACA CTAACTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60431863	NES15936359	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47496612					SNP	A	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431863	NES15936359	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104694387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13651	CpG island 13651	1473 bp proximal
Gm66976	predicted gene, 66976	1238 bp downstream
Ppm1j	protein phosphatase 1J	1053 bp downstream
Rhoc	ras homolog family member C	1963 bp upstream
Rr77009	regulatory region 77009	1213 bp proximal
Rr375521	regulatory region 375521	1812 bp downstream
Tssr31056	transcription start site region 31056	1501 bp upstream
Tssr31057	transcription start site region 31057	1722 bp upstream
Tssr31058	transcription start site region 31058	1771 bp upstream
Tssr31059	transcription start site region 31059	1955 bp upstream