rs47497688 SNP Detail

Summary

• ID
  rs47497688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:193903574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTCTAG ACTCCATTTA
  TAGCCACTTC CAACCTTACT CTTCTCTAAG TAACTTTCCT TATGTGTGTC TCCATATTTC
  TCTCTCCTCT GTCAGTCATA GATAAAACAC TAATGCAGAC ATAACCCTAG CACAGGAACC
  CCCTGAGGCT GTAATAATCT CTTTCCCACC TAGCGTCCAG TCTTAGAGGT CAAGTCCTTA
  Y
  AGGGAACTTC TCGATAGTTG CACAAGAAGC TTTGGTCTTC TCAACTCTTG GTTTGAGACA
  GGACTTGAGG AGACTTTTTT ACCTGCCTTT TTTGTTGTTG TTTTTAAGAA AAGTAATAAT
  TTATAAAAGG TCACAAAACG TATATAGTCC CACTTGTGAG TTCCCAAAAG AAATTACACA
  ATGTTTCCAG AGAGTCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60365290	NES15865121	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47497688					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60365290	NES15865121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:193903574 () rs orientation: forward

Symbol	Name	Function Class
4930503O07Rik	RIKEN cDNA 4930503O07 gene	within coordinates
Rr426624	regulatory region 426624	1625 bp proximal
Rr426625	regulatory region 426625	1856 bp proximal
Rr426626	regulatory region 426626	1889 bp proximal