rs47498336 SNP Detail

Summary

• ID
  rs47498336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68257329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTGTATA GACATATACT
  TGCATATAAA GTTGAGCATG TCTACATGTG GATATAAGAG GACAACATTG GATATTAGTC
  TGTAGAAGAC ATACTTTTTG TTTGTTTTTT TTTTGTGTTG CTTTGTTTTG TTTTGTTGTG
  ATACAGGATC TGTTATTGAC TTTGGACCAT TGTGATTAGG CTAGTCTAGC TAACCAATTA
  M
  TCCCTGGGTC TCCAATGTTG GGAATACTAT TACATATAAC CAGGCCTGGC TTTTTCATGT
  GGATCAGAGG ACTGAGTCCA CTCTGGTTTT TCACTGTTGT GTAGCAATCA CTTTAGTAAC
  AGGGTCTTTT CTCTGGACTG ATTTAAAATA TGTACTCAAA TTTCCCATTG AACCTCATAA
  ACCCTCCGAC ATATATGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146487407	ENSMUSSNP5550937	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321154312	CHEV_4_68000126	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47498336					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68257329 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	1978 bp upstream