rs47499065 SNP Detail

Summary

• ID
  rs47499065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54757914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCCAGGG CGTGAGCTCA
  GGTGTCACCA GGCTGGGCTG ATTTACATTT ACTTGACAAG CCATCCTGAT AGCCCCTCAA
  ACTCCAGTTC CGTGTATGTT ACAAAAGGCT TATTACACTT ATGTCAGAGT TTCTTCAAAC
  GCTGGGCCAT AGATACAGTT TCTTCCTTCT GTGTTCCCAG TGGGGACGGC AACACAGCAA
  R
  TGTGGAAGGA AAGAAAGATG AATGTATACA TACAATATTT ATTTCCAACA GGACCATTAA
  ACCTCTTTAA CATGACACCA AAAAATAACA AGGTCTACTA GGAGGGTCAC CATGAAGGTC
  CATATTTGTA CTAAATATTT AAATATATTT ATAAGAAATT GTTCCTTGGG GCAGAAGTAT
  CAATGATAAA CATAACAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149030998	ENSMUSSNP21680	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47499065					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54757914 () rs orientation: forward

Symbol	Name	Function Class
Cltb	clathrin light chain B	within coordinates
Cpgi5644	CpG island 5644	411 bp proximal
Rr388462	regulatory region 388462	332 bp downstream
Rr480257	regulatory region 480257	642 bp distal
Rr480258	regulatory region 480258	1923 bp distal
Rr480259	regulatory region 480259	564 bp proximal
Rr480260	regulatory region 480260	1181 bp proximal
Tssr122620	transcription start site region 122620	1173 bp downstream
Tssr122621	transcription start site region 122621	1208 bp downstream
Tssr122622	transcription start site region 122622	1231 bp downstream
Tssr122623	transcription start site region 122623	1426 bp downstream