rs47500218 SNP Detail

Summary

• ID
  rs47500218
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67231883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCTAGTGA CGTGCATCGT GGACAGCACA GCTCTTGAGT
  GTGTAGCTAG GACTTGACAT ATCTCAGTGC ATAACAATAG AAATATCAGT AATTCAATAA
  A
  TTTTTTTTTA GGAAAAGCAT TGCTATGATG AAATATATGT CAAAACCTGC ATATGTTAAA
  ACTCTAAATA GCAATTAAAC AACAAGTTCA AGGCACTGA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144540091	ENSMUSSNP2340148	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47500218					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67231883 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7226	transcription start site region 7226	556 bp upstream
Tssr7227	transcription start site region 7227	1038 bp upstream
Tssr7228	transcription start site region 7228	1090 bp upstream