rs47500220 SNP Detail

Summary

• ID
  rs47500220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151350434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAAAAA GCCTCAGGAG
  ACCTCCCTCT CAACTTCAGT GACTCCACAT TCTTTACTTG GGTGTGGGGT GAAGAGAGTC
  TCTCTTCTTT GTCTGTGTTA AAATAAATAC AGCAATAAAG TGCAGGAGAC CCCAGCATAC
  CCTGGACAGT GAGGCATCTT GGTCCTGAAA GGGAAAGCCT GGGGAGAAGA AAATGAAGAA
  Y
  AGGCCAAATC CCCCTTACAA TGACACCTTT AGAATGTAGA CAGGACAGCC ACCAAGGCTG
  ACTCTTAGCT CCCACACAGG AGGGAACACC TCTCATGGGA GTATGTACTA GGAACTTTTA
  TGTGAATATA AACCACTGGC ATAGGGGAGA AAGACAACAT TGGGTAGTCT GTGATTTGTG
  TGGAGAGAGA TAAGGATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144728483	ENSMUSSNP4411589	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47500220					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151350434 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	within coordinates
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	within coordinates
Rr117371	regulatory region 117371	within coordinates
Tssr54686	transcription start site region 54686	1181 bp downstream
Tssr54687	transcription start site region 54687	1203 bp downstream