rs47500224 SNP Detail

Summary

• ID
  rs47500224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153471682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCCTCAC CAGTGCTGGG ATTAAAGGCA TTCACCACTG
  CTCCGGGCTC ATCAGCTATT TAAAGTATTA TCCCAAATAA ACAGAAAAGA TGCTCGAGGT
  Y
  GCTCTAAACT ACAGTTAGGG AAATGTTAAC CAGTGAAAGT AGATACCTCT TCATTTACTG
  GACCTACAAA CCAAGTCTGG GAACACAAAC TCTACTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147999340	ENSMUSSNP5260319	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47500224					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153471682 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Rr567709	regulatory region 567709			673 bp proximal