rs47501231 SNP Detail

Summary

• ID
  rs47501231
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174314165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTATCT GCAAGAGCAG
  GCCCTGGTCT CTAGATCAAG AGATCTTGAT CAAGAAATCA AGAGATCTGC TCTCCAGATT
  GACTGTCATC AATGTTTGGC ATCATGGTAG CATGAGCTGA GACCAACAGG AAGACACTCC
  ACGTGGGTGG CCAGCTTTCT AGATGTCCGT GGGGGTGAGG GGCGCTATAA CATGGGGGAT
  T
  TCAGTCAGAA CAACCCAGGT CACTCAGGCC ATCATGCCAT CACTGGGGTT CAGCCACGAC
  ACCGTGAGTC TGTCAGGTAT CAGTCAGGGC ACTCCAGCCA CCACAAGCCG TCGGGGTTCA
  GTCAGGTCCC GGTGAGTCTG TCAGGTATCA GTCAGGAAAC TCCAGGATAC CCTGGATACG
  TCGGCGCTCA GGACACCCCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148343909	ENSMUSSNP2172635	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47501231					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174314165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	717 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	505 bp upstream
Rr572131	regulatory region 572131	1445 bp distal
Rr572132	regulatory region 572132	1056 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	230 bp proximal
Rr572135	regulatory region 572135	516 bp proximal
Rr572136	regulatory region 572136	625 bp proximal
Rr572137	regulatory region 572137	699 bp proximal
Rr572138	regulatory region 572138	824 bp proximal
Tssr28035	transcription start site region 28035	506 bp downstream
Tssr28036	transcription start site region 28036	577 bp downstream