rs47504912 SNP Detail

Summary

• ID
  rs47504912
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101832388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT GCATTAGGAA GGTTGAGAAC
  C
  ACTAATCTAA ACTATCGCTA AGTTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135551461	ENSMUSSNP7141944	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320853502	CHEV_3_101728995	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47504912					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101832388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13622	CpG island 13622	261 bp distal
Rr76960	regulatory region 76960	within coordinates
Slc22a15	solute carrier family 22 (organic anion/cation transporter), member 15	619 bp upstream
Tssr34811	transcription start site region 34811	857 bp upstream
Tssr34812	transcription start site region 34812	773 bp upstream
Tssr34813	transcription start site region 34813	664 bp upstream
Tssr34814	transcription start site region 34814	618 bp upstream
Tssr34815	transcription start site region 34815	580 bp upstream
Tssr34816	transcription start site region 34816	552 bp upstream
Tssr34817	transcription start site region 34817	527 bp upstream
Tssr34818	transcription start site region 34818	432 bp upstream