rs47506258 SNP Detail

Summary

• ID
  rs47506258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124021125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTATTTG AAGAAATAAA
  AGTCACACAA AACTCCAATT TCTTGGCCAA TTCCCATTCC AGAAAAAGTC AAGATACAAA
  TGGAGCCATG TTTTTAAATA GTCATAAATT CTCTTCCTTT CTTCTACTTT GCGATCCCCT
  CCAGAAAAGA TCCCTGCAAG ACTTCGCAAG TGTTATGAAG TGGAGAGTGT TTGCTATCTA
  Y
  CTCTCTGCTC TGTGGAAAAC TTACTGTAAC AGAGTTTATC ACAAACAATC CCCAGGAATA
  GAAGACACTG TGAGAGTAGG AGAAGCCATC ACATACATTT ACTTCCTCAT ACTTATTGGA
  AAAAAAAATA TGGATAGTCT AGTTCAAAGT GGGGATGAAT CAAATACAGG TACAGATATT
  CAATAGGAAA CAATTTCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60445841	NES15938649	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	T	T	T		C	T	T	C		T
ss135782649	ENSMUSSNP4238054	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss320926430	CHEV_3_123930394	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47506258					SNP	T	T	C	T	C	T	C	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445841	NES15938649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124021125 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	1276 bp distal