rs47506662 SNP Detail

Summary

• ID
  rs47506662
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19489180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATTTTA ATGTTTCAGG
  CTTCTGGGGG AGGGGACTTC TGGAGTGGAT GGAATCAGGA AGAAGGTGAG TTCAGTTTAA
  AAAAAGTTGC TGAAATTGCA TACAAAAGTT CAGAAAATGT TTATGCAACA TGAGTGAGGG
  ACTTTATAGA AGTGAAAGCC AACAAGAGAA GGCATCTGGT TCCCCCTTAA GGCACCTTTA
  W
  GGCAGTGAGG ATGAAATCCA GCTGACTTGC TGTACCACCA CTCGTTTCTT TAGGACTTCT
  TCTCATTGCC ACAGACAGAT GTTCTTCTAA GCAGAGAGAA GCTGATGATG GCCAAGTAGA
  TCACACTCTT GAGGAGCAGG AGGAGGTAGG TGTAGTAGGC AGAGGTGCTC GTGAACTGGA
  ACTGCAGCAC ATCTAAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52626788	NES15515585	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	A	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47506662					SNP	T	T	A	T	A	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626788	NES15515585	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19489180 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	50 bp downstream
Tssr118532	transcription start site region 118532	113 bp upstream
Tssr121559	transcription start site region 121559	621 bp upstream
Tssr121560	transcription start site region 121560	559 bp upstream
Tssr121561	transcription start site region 121561	17 bp upstream
Tssr121562	transcription start site region 121562	1151 bp downstream
Tssr121563	transcription start site region 121563	1292 bp downstream