rs47507182 SNP Detail

Summary

• ID
  rs47507182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86929733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCCAAAA GCGAGTGGTC
  CTTCTTGAAG CGCACCTCGT AGGGCGTGCA GCCAGCCAGC GTGAGCAGCG TGTCGCGGAC
  CATCTTGGGC TTGTTGGCCC ACTCCTCCGC GCGGTTGCGC AGGCTCTCGC TCAGCTCTGC
  CAAGGCCTCA GCGTTGCGCT GCTTCTCCTT TAGCTCACGC TCCTGGTCCG TGCTCGACAC
  Y
  GATCCAGGCC TCTTGCCAGC AGCACCCACG CCCACCTCTG CCACCGTCGA CGAAGTCGAT
  GATGGAGCGG AGGATACAGT GGCTGACACA CCCGGGGGAC CCCCGAGACA TGCGGGGCCC
  CCGGGAGCAC CCGGAGGTGC TGGAGTCGGG GGCCCTCGGC TTCCCCCCAA CCCGTGGGGC
  GGAGGCAGCA CCGCGGCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52452461	NES15424533	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47507182					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52452461	NES15424533	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86929733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4926	CpG island 4926	within coordinates
Irf2bpl	interferon regulatory factor 2 binding protein-like	within coordinates
Rr387576	regulatory region 387576	within coordinates
Tssr3903	transcription start site region 3903	1111 bp downstream
Tssr117130	transcription start site region 117130	953 bp downstream
Tssr117131	transcription start site region 117131	986 bp downstream
Tssr117132	transcription start site region 117132	1442 bp downstream
Tssr117133	transcription start site region 117133	1507 bp downstream
Tssr117134	transcription start site region 117134	1744 bp downstream
Tssr117135	transcription start site region 117135	1757 bp downstream
Tssr117136	transcription start site region 117136	1797 bp downstream
Tssr117137	transcription start site region 117137	1849 bp downstream
Tssr117138	transcription start site region 117138	1887 bp downstream