rs47507722 SNP Detail

Summary

• ID
  rs47507722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTGGCA AATATTCTTC
  CTGATATGCC AAAATTCACT TAAAGTATTT CTATTAAGCA AAATCTATAA CTCAAGGCTT
  TCTCGTGTTT TTCCATTTAT AGACCCTTTT CCACCTAAGA AATTTTTACA TGGCATATAG
  AACAGGTATA CAAACAAGGC ATATAAAACA GGTATACAAA CCAAACTATT TTAAAGTCGT
  Y
  CTTTAGCACC ATATTCTTTT TTAATTTAAT TTTATTTGTA ATTCATTTTT TACACTCCAT
  ATTCCATTCA CCGCCCCGCC CCTCCCACCC TCCAACTTCT CCACATCCCA CACCCCCTTC
  CCACCACGCC CATCTCCACA TGGAGGCCCC CACCCTTCAC CCCAAGAATC ATATTTTTAA
  AAGACGAAAG CAAGCTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145238552	ENSMUSSNP5576543	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47507722					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574108 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59881	predicted gene, 59881	1780 bp upstream
Gm59893	predicted gene, 59893	1254 bp downstream
Rr369776	regulatory region 369776	1927 bp upstream
Rr395952	regulatory region 395952	623 bp upstream
Rr486369	regulatory region 486369	1624 bp distal
Rr486370	regulatory region 486370	359 bp proximal
Rr486371	regulatory region 486371	459 bp proximal
Rr486372	regulatory region 486372	1301 bp proximal
Rr486373	regulatory region 486373	1802 bp proximal
Tssr121117	transcription start site region 121117	574 bp upstream
Tssr121118	transcription start site region 121118	653 bp upstream
Tssr124051	transcription start site region 124051	465 bp downstream