rs47508662 SNP Detail

Summary

• ID
  rs47508662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30906714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATTAGG GAATGCTTTG
  GAAAATCACA CTTAATAAGC CCAGGCTTTG CCTACCTCCC CATGTCACTG GGGCTCTACA
  GGGACTTATG GTGATGTGAT AGGCTTGGCC AATACCTCAC ATCTCCTGGG AGGTGGAGAG
  GTGGCTCTTG AGTGGGATCT TGGGCCTGGT GGATCCCACA AACTGAGTGT AGCTCAACAT
  Y
  CCAAGGCTAG TGATTGAAAC AACAGCAGAT CATGGGTACT TCCCTGCCAC CATTACCTCA
  GACTCTTCAG AAGTTCAGGC CACTTTGGAA ATTGTCCCTG GAACATCTCT ACAGGCTCCT
  TAAAGTATTC TTAATAATGC TTGTACTATC TGTGTGCGGG AAGCCTGATC AGATAGCTGT
  GGTCCAAAGA CCCTAAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988995	NES16133973	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47508662					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988995	NES16133973	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30906714 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	906 bp proximal
Gm37292	predicted gene, 37292	1068 bp upstream
Gm73020	predicted gene, 73020	1025 bp upstream
Rr645057	regulatory region 645057	684 bp proximal
Rr645058	regulatory region 645058	1064 bp proximal
Rr645059	regulatory region 645059	1218 bp proximal
Tssr65855	transcription start site region 65855	543 bp upstream
Tssr65856	transcription start site region 65856	1037 bp upstream
Tssr65857	transcription start site region 65857	1081 bp upstream