rs47510523 SNP Detail

Summary

• ID
  rs47510523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77860591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTTAGAG CGGTGCTTTT
  AGATTTTGGA TCATTCTCTG TAGGGTTGTC AACCATTCTA GTCAAACTCC TTGTGATGAT
  TAGAATTTTT GAACCTGTTT AATTTACACA GGATTCTTCC CATTGCCCAC CCCCTAAAAC
  AACAACAACA ACAACAAAAA CCCAAAACCA CAAAACAAAA CTGGGGACTG TACCAAAGGC
  Y
  GTCTGCACCC TAAGCAGATA CTGTACTACA GAGATTTGGT TTTAGCCCCT TTACTGATTG
  GTTAGTTGAC TGACAAGATC TTGTTCTTAC CAAGGTGGCC TTGAATTTGT TAATTTTCAT
  CCTTTAGCCT CCCTATCGGG GTAGCTGGGA CTACAGACCT GAAACATCAG GCCCAGCTTC
  CCTGAAAAGA TTCTCTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555321	ENSMUSSNP1616304	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47510523					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77860591 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp5f1a	ATP synthase F1 subunit alpha			877 bp upstream
Cpgi10281	CpG island 10281			752 bp proximal
Haus1	HAUS augmin-like complex, subunit 1			Intron
				mRNA-UTR
Rr393942	regulatory region 393942			345 bp upstream
Rr541176	regulatory region 541176			348 bp proximal
Rr541177	regulatory region 541177			849 bp proximal
Rr541178	regulatory region 541178			985 bp proximal
Rr541179	regulatory region 541179			1076 bp proximal
Tssr152041	transcription start site region 152041			1093 bp upstream