rs47511745 SNP Detail

Summary

• ID
  rs47511745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86144934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGACTAA GGCCGATGTC
  ATTAGTGCCA GACGGAACGT TTCTGGTCAC ATACTTTTGC CCAGTATAAT AGAGTTATGT
  CCCATCTTTG TCCTCCCATT GGCTTTTTGT GTGGAGCTTT TTCTGTTAAT TCTTCCAGCA
  GCTACCCTAG GAGCTAGAAA ATGAATCCCT AACCCATAAG CAGTTACGCG GAGTTGCAAC
  Y
  GTGCGCACAG TGTGGGGATC TTGCCTGCAG GGTGAGTCCC TCTGCCCCCT TCCATCTCCT
  GTGCTATCGA CAGCATGAGC GTTACAACTA CTGTAAAGCA CGTCGTGGTT TCAGCTTAGC
  TAGAGTGTTA GGGTTTCCTT TGATGGCCGG GTTCCCATCA GCTATAGTCT GTCCTCAGCC
  TGGACGCTGC CCTCGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52450461	NES15424516	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47511745					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52450461	NES15424516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86144934 () rs orientation: forward

Symbol	Name	Function Class
Ift43	intraflagellar transport 43	within coordinates