rs47512075 SNP Detail

Summary

• ID
  rs47512075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:127699906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTAAAA TGTAAAGAAG
  GAGTGAAGCT TCAATGCTCA GTGGATAAAA GTGACTGCCA CCAAGACTGA TGATCTTAGT
  TCAATCCCCA TGGTCCACGT GGTAGGTGAG AAGAGTCCTC AAGTCAACTT CCAACCTGTA
  CATATGTGCT TTGGCATGCC CGCAGCAACA TGTGCCCTGC CGCAACATGC ACAACTGAAG
  R
  AAACAGAAAG GACAGATCTG CTTACTGTGT GTTTCTTTTG TATTGTATTA TATAAGACAC
  TTCGTACAAT ATTGAAAGGA GTCAACAGAG AGGGCACAGA CTTGCCTTGT CCTTAATCTT
  ATATGGAAGC CACCTTAACA TCAAGTGCCA TGCTGGCTGT TGTCTTCTGT AGATGTTATA
  AAGTTGAAAA GCTCTCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60798961	NES16471984	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47512075					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798961	NES16471984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127699906 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	within coordinates
Ccnt2	cyclin T2	1995 bp upstream
Cpgi690	CpG island 690	1660 bp proximal
Rr396250	regulatory region 396250	1672 bp upstream
Rr417683	regulatory region 417683	916 bp proximal
Rr417684	regulatory region 417684	1686 bp proximal