rs47512803 SNP Detail

Summary

• ID
  rs47512803
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60658311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTTCTCC TGTGAGCAAA
  ACACATCTAT GAAGCTAATC TAGTGCCAGG CTGTTTTCCT GGCAAACAAG AGTAGAGAGC
  CTTTGAACCT TCTAACTCAG GTAGTCCACT AAGCTTCATA TCTGCTCTGG ACTTTTGCTT
  TCTGAATAAA ATCCCTCCAA CCTTAGAAAA AGAGTGTGAT TTAATAAATT TTAGATTTAA
  W
  CTATTAACAT TTAACTATTT ATAATATACA TTAAATGCTG TATAACTGAA AAACATTTTA
  TAAAGTAAGC TATTGCCTTC TTAGAAAATG TGCTGAAGGT ATTCCATATG GGGGCAATGT
  GTGCCAGCCC TGGAATAAAC ATAAGAAAAA ACAGGAAGCA AATCGCCGTG CTTCCCTAAG
  CCCAGGTTTC CTGCTCTCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147246166	ENSMUSSNP3501267	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss325639822	CHEV_18_60684893	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47512803					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60658311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	664 bp proximal
Dctn4	dynactin 4	946 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr346411	regulatory region 346411	1711 bp distal
Rr352957	regulatory region 352957	89 bp proximal
Tssr151313	transcription start site region 151313	955 bp upstream
Tssr153448	transcription start site region 153448	737 bp downstream
Tssr153449	transcription start site region 153449	804 bp downstream
Tssr153450	transcription start site region 153450	847 bp downstream