rs47513019 SNP Detail

Summary

• ID
  rs47513019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30255459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGTGGAG GCAGCTTGTA CACATCACGG TTTTTGCTGT
  TGATGACCTC TGAACCCTGG GGAGACAAAG CCCCAGACGA GACCCAAGAG TCAGAGCAGA
  R
  GGTTGAAAGT ACATGTCGCT GGGTGTGGTG GCGCATGCCT TTAATCCCAG CACTCGAGAG
  GCAGAGGCAG GTGGATTTCT GAGTTCGAGG CCAGCCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322135242	CHEV_7_31341053	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47513019					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30255459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18810	CpG island 18810	1437 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	591 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Tssr65782	transcription start site region 65782	1240 bp downstream
Tssr65783	transcription start site region 65783	1174 bp downstream
Tssr65784	transcription start site region 65784	1150 bp downstream
Tssr65785	transcription start site region 65785	1095 bp downstream
Tssr65786	transcription start site region 65786	1082 bp downstream
Tssr65787	transcription start site region 65787	987 bp downstream
Tssr71789	transcription start site region 71789	1346 bp upstream
Tssr71790	transcription start site region 71790	1204 bp upstream