rs47513072 SNP Detail

Summary

• ID
  rs47513072
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84511758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GATGGCTGAG TCGAAGGCCA
  G
  CCTGGTCTAC AGAGTGAGCT CCAGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148458448	ENSMUSSNP1004451	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325261459	CHEV_16_84715115	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47513072					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84511758 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	666 bp downstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	1535 bp downstream
Rr518521	regulatory region 518521	1223 bp distal
Rr518522	regulatory region 518522	524 bp distal
Rr518523	regulatory region 518523	1304 bp proximal
Tssr139173	transcription start site region 139173	664 bp downstream
Tssr139174	transcription start site region 139174	115 bp upstream
Tssr139175	transcription start site region 139175	203 bp upstream
Tssr139176	transcription start site region 139176	739 bp upstream