rs47513448 SNP Detail

Summary

• ID
  rs47513448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24360679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAACTAT TAACTATCCC
  CTGTTTAGTC TCCTGAGTGT TGAGATAACA CACCTCACCA TTCAGCAATA TCATTATTGC
  TTAGAATGAA GGATACTATG TACAGCAAAT GATGGTCTTG CTTGAAACTG TCTACCAAGG
  CCGGAGAGAG GGCTCAGCAG GTAAAGGCGT TTGCCACCAA GCCTGACACG CTGATTTTGA
  Y
  TCTTAGAGTC CACATAGTGG AAGGAGAAGC CACTCCGGCA AGCTGTCCTC TGACTTCCTC
  ATATGTGCGG TGGCGACACA ATAAATAAAT ACTGGTGAAA AAAAAAATCT AAAAAGAACC
  CTATACCAGC AAACCAGATG GGAGATAAAT GATAGTGACT GTGAATGTGG AAAGCACCCA
  CAGCCTGCTA CAATCTCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982565	NES16150677	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47513448					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982565	NES16150677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24360679 () rs orientation: forward

Symbol	Name	Function Class
Gm4598	predicted gene 4598	40 bp upstream
Rr643537	regulatory region 643537	1997 bp distal
Rr643538	regulatory region 643538	282 bp proximal
Rr643539	regulatory region 643539	1229 bp proximal
Rr643540	regulatory region 643540	1492 bp proximal