rs47513690 SNP Detail

Summary

• ID
  rs47513690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91153813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTTTTA ATGTATAAAA
  CCCCCTGCTT GAGAGCTGCA GAATACACAG ATTCAAACTG CCTCTGTGTT TGTTTCTGTT
  TGTCACCACC AAATCCTTAC CCACCTAGCT TCAAGGACCC TCATTCCAGG GACCCCCCGT
  ACCCGACTGG GGTGGTCCGT GGATTGAAAA CCTCCAGCAT CCTTTCAGTC CATTAAGACC
  Y
  TGCATAGTCA GAGTCATCAC TCTGTTTGGA TGTAGCACAT AGTAGGTGCG CAAGGAAAAG
  TGTAGTTGAG AAAGGTCTGT GAGCTCTAGC CCCACTGTCA CATCCCTCAC GTGGCATGAC
  GACCTTCTCA AATTCATGTT CAGTGTGACA GCTGTGGAGT TAATGAGAGC TGCAGATCAG
  CAGCCGGGAC GTGCCAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60507290	NES16338778	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47513690					SNP	T	T	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60507290	NES16338778	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91153813 () rs orientation: forward

Symbol	Name	Function Class
Gm60057	predicted gene, 60057	139 bp downstream
Rr404956	regulatory region 404956	1556 bp upstream
Rr519336	regulatory region 519336	1655 bp distal
Rr519337	regulatory region 519337	1269 bp distal
Rr519338	regulatory region 519338	1573 bp proximal
Rr519339	regulatory region 519339	1694 bp proximal
Tssr4955	transcription start site region 4955	1556 bp upstream
Tssr142077	transcription start site region 142077	1673 bp upstream