rs47514000 SNP Detail

Summary

• ID
  rs47514000
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42404385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTGAGC TGCCATGTGT
  GTTCTGGAAA TGGAACCTGG GTTCTCTTGA AGAGCAGTCA GTGCTCTTAG CCAGCAAGCT
  ATCTTTCCAG CTCTTATTAT CTTTCTTCAT TTGCCATCTT AGGAATGAAA CCCAGGGACT
  CACGCGTTAG AAGAATGCCC ATCCACAAAG ATAGGTACCG ATCTCTAGCG ATTCATCATT
  Y
  GATAGATGCT TAGGTTGCTA CTGTTCTTGA CTAACCACCT ACGATTATGT TGCTGAATTA
  CATAACTTAA GATTTTGTTA TTACATTTGG GTATGTGCAT GTGTGCCTGC AGTCATGAGT
  GTCACAGCCA GGACAGCTCT CAGGAGTGAG TTCTCTTTTT ACACTGGAGG TAATCAAATG
  AGGCTTGGCA GACGTGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61273598	NES16777579	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47514000					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273598	NES16777579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42404385 () rs orientation: forward

Symbol	Name	Function Class
Rr219442	regulatory region 219442	385 bp distal
Rr227589	regulatory region 227589	1786 bp distal
Snx3	sorting nexin 3	within coordinates