rs47515016 SNP Detail

Summary

• ID
  rs47515016
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7349753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATTTTC CAGAGAAAAA
  AACTATTTTG AACTTTAACA CACTTTTCTT ACCCAGACTG TCAGTTTGTG AGGAAGTTCT
  TCCTATGGGC ATGGGTGCAG AACTAAGAGA CTAGAAAGAC AAAATTAACC AGTGGTATCA
  TGTTTATTTC CCTTTCTTTC CCCAACACAG GATCTATAAT TACACTCCGG ACATGAAGCG
  W
  GAGGATGTAG ACTACATATT TCAGAAAGCT TTCCAAGTCT GGAGTGATGT GACTCCTCTA
  AGATTCAGAA AGCTTCATAA AGATGAGGCT GACATTATGA TACTTTTTGC ATTTGGAGGT
  ATACAATTTA CACATCACCT GTGTCATTCA TCATGCTGTA TGATGTCATC ACTCACTATG
  TTATGCCATT ATGTGTGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680464	NES16229818	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47515016					SNP	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680464	NES16229818	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7349753 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83688	transcription start site region 83688	1516 bp downstream
Tssr83689	transcription start site region 83689	1162 bp downstream
Tssr83690	transcription start site region 83690	1135 bp downstream
Tssr83691	transcription start site region 83691	1106 bp downstream
Tssr83692	transcription start site region 83692	1083 bp downstream
Tssr83693	transcription start site region 83693	1051 bp downstream
Tssr83694	transcription start site region 83694	1022 bp downstream
Tssr83695	transcription start site region 83695	940 bp downstream
Tssr83696	transcription start site region 83696	877 bp downstream
Tssr83697	transcription start site region 83697	836 bp downstream
Tssr83698	transcription start site region 83698	659 bp downstream
Tssr83699	transcription start site region 83699	635 bp downstream
Tssr83700	transcription start site region 83700	574 bp downstream
Tssr83701	transcription start site region 83701	526 bp downstream
Tssr83702	transcription start site region 83702	504 bp downstream
Tssr83703	transcription start site region 83703	22 bp downstream
Tssr83704	transcription start site region 83704	within coordinates
Tssr83705	transcription start site region 83705	253 bp upstream
Tssr83706	transcription start site region 83706	277 bp upstream
Tssr83707	transcription start site region 83707	312 bp upstream
Tssr83708	transcription start site region 83708	333 bp upstream
Tssr83709	transcription start site region 83709	353 bp upstream
Tssr83710	transcription start site region 83710	863 bp upstream
Tssr83711	transcription start site region 83711	1350 bp upstream
Tssr88064	transcription start site region 88064	1024 bp upstream
Tssr88065	transcription start site region 88065	933 bp upstream
Tssr88066	transcription start site region 88066	359 bp downstream