rs47515943 SNP Detail

Summary

• ID
  rs47515943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:131231012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGACCA TGTGGCAAGA
  ATTTCCCATC GATTCCCCAA AGCAGGCAGG CTATTGCTCC CGCGCTCGCT GGCTGTTTAT
  CATTTGGAAC CTTCATGCAA CAGAACCTTG CCTACACACT CCCTGTCTAA TTCATCTTCA
  CTCATATATT TTACCATTAC AGATAGCCTT CCCCTTAAGC TTGTCTATTT ACTAGCTGGT
  R
  TGACAGATGA CAGCGACGCC GAGCCATGCT AGATGGCATT TGTGTGGCTC TGGTGCCAGA
  AGCATTCTAA GCCCGGGTGT TGCATATTTA TTGATCGCCA TATTCCCAAT AATCTGATGC
  CCGTCACATT TGACAACACT ATGTGGCGGG GTCAGCTAGA TGGGGCTAAT GAAACTCTTT
  CCAAGATGGA TGTTGTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61066484	NES16063272	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47515943					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61066484	NES16063272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:131231012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19823	CpG island 19823	761 bp distal
Rr656477	regulatory region 656477	within coordinates