rs47516880 SNP Detail

Summary

• ID
  rs47516880
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:123033608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGACGCC TCCTAGCGCG
  CGTGGACACA CACACACACA CACACACACA CACACACACA CACACACACG TTAGCTGCAG
  TGCAAAACAT GTCCCAGTTT CTAGGTGAAC AAGCAGTTAA AGATGTATTG AATAAGGCCA
  GGTACTGAAG GGGGTTAGAA ACGTGGGAGA AACCTCATGG GCGTCAAATT AGCATTCCCC
  W
  AGATTAAATT TCATGGTTGT ATATGCCTAA AGTTAGACTC GATAATACAA GCTGCATTTG
  AAGGCAACAA TTACAAACGG GGAAATTGAG CCTCTTAAAA ATCAAATGCC AAGGTCACAC
  GGCAACTGGA AGTGCAAGGT TATCGCACAG ATTTCAAATC CCCAGTACTC AGTACCTCCA
  TGAAAGGCTG AATTAAGATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss52240102	NES15347064	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs47516880					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52240102	NES15347064	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:123033608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2311	CpG island 2311	96 bp distal
Gm4129	predicted gene 4129	within coordinates
Gm55025	predicted gene, 55025	732 bp upstream
Rr224370	regulatory region 224370	within coordinates
Tssr99665	transcription start site region 99665	1235 bp upstream
Tssr99666	transcription start site region 99666	742 bp upstream
Tssr99667	transcription start site region 99667	728 bp upstream
Tssr99668	transcription start site region 99668	716 bp upstream
Usp15	ubiquitin specific peptidase 15	708 bp upstream