rs47516982 SNP Detail

Summary

• ID
  rs47516982
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90946051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT TAAAAAGCTC TTCCTCCCCA
  T
  CCCCTCATTA GTCACTAAAG ACAAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146922375	ENSMUSSNP2510388	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320391690	CHEV_2_90955863	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47516982					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90946051 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	76 bp distal
Rr560650	regulatory region 560650	1535 bp distal
Rr560651	regulatory region 560651	496 bp distal
Rr560652	regulatory region 560652	433 bp distal
Rr560653	regulatory region 560653	1948 bp proximal
Spi1	Spi-1 proto-oncogene	mRNA-UTR
Tssr18851	transcription start site region 18851	1423 bp downstream
Tssr18852	transcription start site region 18852	1363 bp downstream
Tssr18853	transcription start site region 18853	535 bp downstream
Tssr18854	transcription start site region 18854	493 bp downstream
Tssr18855	transcription start site region 18855	316 bp downstream
Tssr18856	transcription start site region 18856	268 bp downstream
Tssr18857	transcription start site region 18857	152 bp downstream
Tssr18858	transcription start site region 18858	109 bp downstream
Tssr18859	transcription start site region 18859	4 bp downstream
Tssr25158	transcription start site region 25158	39 bp downstream