rs47517120 SNP Detail

Summary

• ID
  rs47517120
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70094954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG CAGCTGGGTG CGGCTGAGTC
  S
  GGCACCCAGA ATGTGGGTGT GTGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325895427	CHEV_X_68304523	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47517120					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70094954 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22753	CpG island 22753	961 bp distal
Gm61915	predicted gene, 61915	1374 bp upstream
Gm61918	predicted gene, 61918	1495 bp downstream
Mamld1	mastermind-like domain containing 1	within coordinates
Rr691735	regulatory region 691735	1385 bp distal
Rr691736	regulatory region 691736	1082 bp distal
Rr691737	regulatory region 691737	1245 bp distal
Rr691738	regulatory region 691738	1071 bp proximal
Tssr161155	transcription start site region 161155	1223 bp downstream
Tssr161156	transcription start site region 161156	1204 bp downstream
Tssr161157	transcription start site region 161157	1177 bp downstream