rs47517253 SNP Detail

Summary

• ID
  rs47517253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29151812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACTGATC ACAAGGCTCC TCTTGCTTTC TCTGTGTTCT
  CACAAGCTGT CAGCTTTCTC CTCCCATTAG TCCACTGGAC AGAGCATCAC TTGCTTGTGT
  R
  TGTGCCCTGC TGTTATTCCC TAAACCACAT AATTTAACAG CTAGTGCTAT AGCATTAGCT
  TGTAATAGGT ATGATAAGTA ATTCAGAGAC TCTTCAAATA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559589	NES16576369	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47517253					SNP	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559589	NES16576369	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29151812 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Pxt1	peroxisomal, testis specific 1	1148 bp downstream
Rr392487	regulatory region 392487	1391 bp downstream