rs47517335 SNP Detail

Summary

• ID
  rs47517335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105286325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGGCTAA GCTGGAATTT
  ATCAGGCAGC ACAGACCATT CTGGTACTCC TCCTGCCTCA TTTTCCTAAG AACTGGAATT
  CCTAGTTTTT AGTTATATTT TATTTAGGGA GAGGGGTGCA CACCGGTGAC AGTATAGGTA
  TGGAGGACAG GTTGCACTTT CAAGACTCCG TTCTCCCCTT CCCCATGAGA CTGCACTCAG
  R
  TCATCAATCT AGGATCAGGC AATCTAGGAC AGGCATCTTA TTCACTGAGC CATGTTGTGG
  ACTCTGGAAA AAAATAATAA TGAGAAACTA GGCAAGGTAT TAACAACTCA GATGTTGGTC
  AGGGACTTGA AATAAAGAAG GTGATTCATA ACACCCCAAC ATTTTACCAG CAGAGCTTAG
  CCCAGAAATA TTATTATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145082635	ENSMUSSNP2544116	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47517335					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105286325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	1579 bp distal
D1Mit307	DNA segment, Chr 1, Massachusetts Institute of Technology 307	1251 bp proximal
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	1890 bp upstream
Rr416388	regulatory region 416388	1941 bp distal
Rr416391	regulatory region 416391	1858 bp distal
Rr416392	regulatory region 416392	1268 bp distal
Rr416393	regulatory region 416393	424 bp proximal
Tssr8255	transcription start site region 8255	1832 bp downstream
Tssr8256	transcription start site region 8256	1814 bp downstream
Tssr8257	transcription start site region 8257	1743 bp downstream
Tssr8258	transcription start site region 8258	1511 bp downstream
Tssr13127	transcription start site region 13127	1949 bp upstream
Tssr13128	transcription start site region 13128	1886 bp upstream
Tssr13129	transcription start site region 13129	1812 bp upstream
Tssr13130	transcription start site region 13130	1637 bp upstream