rs47517900 SNP Detail

Summary

• ID
  rs47517900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60723726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGCGAG GACCTGGTGA
  CAAGGTGGCT AGCTAAAACC AGGAAGAGGC TCTCATGAGG AGCAGGGTCA GCTGGCACCT
  CCGTGCTGAA CTCCCAGCCT CCAGATGTGA GAGATACATC TGTACTTCAA GCTGCCCCAT
  TCATGGTATT TTATAGAATC AATTGGAACT TACCTGGGTA GAGTCTCATA AATAAAACTC
  Y
  GCAGGCCATG CATCACCCTG AAGCTTTGGT TGGGAGATAC TCATATACCC CAGTGTTTCA
  TCTGGTGTAA AAAGCTCAGG CATGGGGAAG CTCCCCATGG TCATGCATCC GTCCCTCACT
  TCCTGGAAGA TGTGTTCCCT CTCCCTCACC CCACCCATCC TTATAGGGTT GTAACTGTGA
  CATGACCTTA CATTTGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61278406	NES16780526	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47517900					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61278406	NES16780526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60723726 () rs orientation: forward

Symbol	Name	Function Class
Gm36750	predicted gene, 36750	660 bp upstream
Gm66331	predicted gene, 66331	within coordinates
Rr432238	regulatory region 432238	1492 bp distal
Rr432239	regulatory region 432239	627 bp proximal
Rr432240	regulatory region 432240	736 bp proximal
Rr432241	regulatory region 432241	1933 bp proximal