rs47519938 SNP Detail

Summary

• ID
  rs47519938
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190955233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TGCAGGAGTG CAGTGTCTCC AGAGGCCAGA GGGTGTTGGA
  TCCCTAGTAT CTGTAAGGAG CTAATGTGCT GGAAATTGAC TCTAGTCCTC TGCAGGAGCA
  R
  GTCTTTCTTG TAACTGCGGA GCCATGTCTC CAGCCTCCAT AGTGTCCTCT CTGCTTTCAT
  GTCACACATA TACATGCATA TACAGATTTA AATCTAGATT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146503178	ENSMUSSNP1784830	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47519938					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190955233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1220	CpG island 1220	807 bp proximal
D730003I15Rik	RIKEN cDNA D730003I15 gene	1418 bp upstream
Rr26272	regulatory region 26272	557 bp distal
Rr29193	regulatory region 29193	767 bp proximal
Rr396715	regulatory region 396715	1116 bp upstream
Tssr372	transcription start site region 372	1811 bp downstream
Tssr10744	transcription start site region 10744	1407 bp upstream
Tssr10745	transcription start site region 10745	1426 bp upstream
Tssr15770	transcription start site region 15770	1875 bp downstream
Tssr15771	transcription start site region 15771	1940 bp downstream