rs47520659 SNP Detail

Summary

• ID
  rs47520659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149211882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAGTAG CCTAATTCAG
  TAGTTTTGTT TTTAGCACAA TTGAAATAAA TTCAGTAAAC TTAGTATGGT CTCAATGACA
  CTGTAAGGGA AATGTACTAG ACCTTAACTC TTGCTTTCTT GTTTCTTGAT TTTCATAGAA
  TTAGAGGCGT GAATACCTTG TGGAAGAGAT TAAAAGGTAA AATTGTATTT ACAGGTAAGT
  Y
  TGCCTTTTAT AAAGCCTATC CTGGTTCTAC TGGATGACTA TTTGCATTGT ACCGTGGACT
  AACTTATTTT AGAATAAAGA GTATCATTGA ATCAACACTA GTTAAACCTA CAGAACTTGC
  CTAGCATGTG CTTGCCTTCA ATTTTTGCAT TTGGGAGACC AAGTCAGACA GATCTTTGAG
  TTAAAGGCTA GCCTAATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60961289	NES16169791	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47520659					SNP	T	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961289	NES16169791	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149211882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	511 bp distal
Gm56997	predicted gene, 56997	709 bp upstream
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	332 bp downstream
Rr380295	regulatory region 380295	1106 bp upstream
Rr641719	regulatory region 641719	900 bp distal
Rr641720	regulatory region 641720	1042 bp distal
Rr641721	regulatory region 641721	993 bp distal
Rr641722	regulatory region 641722	720 bp distal
Rr641723	regulatory region 641723	219 bp distal
Rr641724	regulatory region 641724	239 bp proximal
Tssr59650	transcription start site region 59650	1066 bp downstream
Tssr59651	transcription start site region 59651	946 bp downstream
Tssr59652	transcription start site region 59652	902 bp downstream
Tssr59653	transcription start site region 59653	826 bp downstream
Tssr59654	transcription start site region 59654	629 bp downstream
Tssr59655	transcription start site region 59655	560 bp downstream
Tssr59656	transcription start site region 59656	49 bp downstream
Tssr64179	transcription start site region 64179	734 bp upstream
Tssr64180	transcription start site region 64180	699 bp upstream