rs47521416 SNP Detail

Summary

• ID
  rs47521416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44054851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATACCAA GTTCTCTCTT
  GTCCCACCCA AATCAAGAAT TTAAAAATCT TGAATGAGGC AGATCTTAAA AAGAACTGTT
  TCCACCTCCC TCCCCCTTTG TTAGCCACAG GCAGGGGAGA ACCAGAGAGA AGGGGGAGGG
  GGTACAAAAG CTTGTGGTTG AAACCTATGA CAGTATGACC GGCAGGCCTC AGGGTTCCAC
  R
  GCTCCTCCCT GGATTCAAGC AGACCCTGTG ATGGGCACCA GCCACTTCAT GCTTTATGGT
  TGAAGCCTTC AAATGAAAGG ACAGCCAAGT CTGAGGAGAG GCAGGAGGTT GAAGCTGGCT
  CAAGGTCCAG CAAAACAAAA AGACAACAAA TGAAGCATCT CCTCTTCCCA GGAGCATTCA
  CTCCGCAACT CTGCTCCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136391628	ENSMUSSNP4715107	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47521416					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44054851 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	within coordinates
Mcam	melanoma cell adhesion molecule	827 bp downstream
Rr677565	regulatory region 677565	567 bp proximal
Rr677566	regulatory region 677566	894 bp proximal
Rr677567	regulatory region 677567	987 bp proximal
Tssr89112	transcription start site region 89112	973 bp downstream
Tssr89113	transcription start site region 89113	1159 bp downstream