rs47521897 SNP Detail

Summary

• ID
  rs47521897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45570999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCGTCTG CCTTCTCCCT
  CCCTCCCTTT CTCTCTCTCC TCTGGTGGTT TTCTGCTTCT CTCGACTCTC AATATATACC
  AACCCTTTTA TATCCACTTT AGCCTCGCCC AGCTGAGGTC TCCAGTCAGG GGAGGGCACG
  AAATCTTGGT TCCTTATTCT CTGCCCACCC AGTCACACAG AAGGCATGTT CTGGGACCTC
  Y
  TTTCAGGGCT CAGATGAGAA GTCCTTGAGG CCCTGGGGTG GAGCATGTTA CCTTCTTGGA
  CTGGATGCCT GCTCTCTTTG ATGAAGTTTG GGGCAGAGTA GATGACACAA GAATCTGTAG
  AAGGCCAGAT CCTGTGACAC AGATCAAACT TTGGGCTGGC TCATGGCAGG ACAAAAAGTA
  TGAAATTACG GGAAGGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61002544	NES16125143	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47521897					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002544	NES16125143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45570999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19109	CpG island 19109	1391 bp proximal
Emp3	epithelial membrane protein 3	171 bp upstream
Gm45442	predicted gene 45442	565 bp downstream
Rr368318	regulatory region 368318	1181 bp upstream
Rr368319	regulatory region 368319	1401 bp upstream
Rr400324	regulatory region 400324	within coordinates
Rr400325	regulatory region 400325	1782 bp upstream
Rr646609	regulatory region 646609	within coordinates
Rr646610	regulatory region 646610	476 bp proximal
Rr646611	regulatory region 646611	1607 bp proximal
Tssr2257	transcription start site region 2257	1265 bp downstream
Tssr66661	transcription start site region 66661	1626 bp upstream
Tssr66662	transcription start site region 66662	1959 bp upstream
Tssr72490	transcription start site region 72490	1382 bp upstream
Tssr72491	transcription start site region 72491	1154 bp upstream
Tssr72492	transcription start site region 72492	939 bp upstream
Tssr72493	transcription start site region 72493	907 bp upstream
Tssr72494	transcription start site region 72494	897 bp upstream
Tssr72495	transcription start site region 72495	881 bp upstream
Tssr72496	transcription start site region 72496	795 bp upstream
Tssr72497	transcription start site region 72497	692 bp upstream
Tssr72498	transcription start site region 72498	448 bp upstream
Tssr72499	transcription start site region 72499	263 bp upstream
Tssr72500	transcription start site region 72500	128 bp upstream
Tssr72501	transcription start site region 72501	1613 bp downstream
Tssr72502	transcription start site region 72502	1844 bp downstream