rs47522077 SNP Detail

Summary

• ID
  rs47522077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144576731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTTAAA ACAATAAATC
  TACTGAGATT CCCTCCTACA GTGGTGAGGT CAGGGGCTCC CCAGCCCTCC CGTACCTTCT
  GTTAGTCACT TGAATGATTC ACAAGCTCCA GAGATTGCAT AACACCAGAG TGTGTCATCC
  ATCACTTCTG TGGTTAACAC AAGCAGAAAT AATATCACCG TATCATGGGG CCAGAGCTTG
  Y
  GTGAGGTGGG CCTAAGTGCT CTGGCCAGGC AGTCCCTGGA CACTGGGCCT AGCAAGGCCA
  AGATCCTTTC CCTGAGACCA TCTGTGCCTG TCCAAAAAGT GACCCTTAGT TACATAGTCA
  CCTTTCATTT GGCTTTTGTT GTGGTTTGGT TTGAGGTTTG TTTTTTGTTT TTAACTATGC
  GTGTGTGTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852893	NES15999182	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47522077					SNP	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852893	NES15999182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144576731 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr36	DNA Segment, Chr 5, Derry C. Roopenian 36	552 bp proximal
D5Mit43	DNA segment, Chr 5, Massachusetts Institute of Technology 43	507 bp proximal
D5Mit43.2	DNA segment, Chr 5, Massachusetts Institute of Technology 43.2	614 bp proximal
Gm71822	predicted gene, 71822	within coordinates
Rr624456	regulatory region 624456	1018 bp distal
Rr624457	regulatory region 624457	1073 bp distal