rs47523514 SNP Detail

Summary

• ID
  rs47523514
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148491211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC CCTCCCCACC ACCCACCATG
  A
  CTCTGACAGA CCTAAGTGCT GTTGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss144691570	ENSMUSSNP1729408	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47523514					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148491211 () rs orientation: forward

Symbol	Name	Function Class
1700013A02Rik	RIKEN cDNA 1700013A02 gene	540 bp upstream
Cpgi17076	CpG island 17076	1254 bp distal
Gm72666	predicted gene, 72666	within coordinates
Gm72684	predicted gene, 72684	476 bp upstream
Rr378792	regulatory region 378792	within coordinates
Rr378793	regulatory region 378793	1987 bp upstream
Rr625194	regulatory region 625194	1750 bp distal
Rr625195	regulatory region 625195	1122 bp distal
Rr625196	regulatory region 625196	1584 bp distal
Rr625197	regulatory region 625197	550 bp distal
Rr625198	regulatory region 625198	246 bp distal
Rr625199	regulatory region 625199	within coordinates
Tssr54574	transcription start site region 54574	1973 bp upstream
Tssr54575	transcription start site region 54575	1884 bp upstream
Tssr54576	transcription start site region 54576	1713 bp upstream
Tssr54577	transcription start site region 54577	1558 bp upstream
Tssr54578	transcription start site region 54578	520 bp upstream
Tssr54579	transcription start site region 54579	376 bp upstream
Ubl3	ubiquitin-like 3	1612 bp upstream